Difference between revisions of "PCR Analysis of Tail DNA"

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see [[Genotyping Details]] for strain specific details
+
see [[Genotyping Program]] for strain specific details
  
 
==Materials==
 
==Materials==
 +
# Dream Taq Green master mix
 +
# Specific gene Primers (0.4um Working stock)
 +
# Tail digest DNA
 +
# ddH2O
  
 
==Protocol==
 
==Protocol==
#Use the following Volumes per Reaction:
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First, make 250ul of 0.4um working stock primers from 100um Primary Stocks.
#Buffer: 4 uL of 5X Go-Taq buffer ("Molecular Biology Stuff" box in freezer)
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#248 ul ddH20
#Forward Primer: .4ul
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#1ul forward primer (100um)
#Reverse Primer: .4ul
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#1ul reverse primer (100um)
#dNTPs: .4uL of 2 mM ("Molecular Biology Stuff" box in freezer)
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#Sterile water: 13.6 uL
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#Polymerase Go-Taq: 1 uL (6th floor in Genotype Yellow Box in freezer)  
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#Template: 1 uL
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Run PCR Program (approx 2 hours).
 
Use Cycler 1 on 6th Floor
 
*Login: Sergey, Just press enter to Login
 
*Under Genotype folder, pick Ingles program for Ingles genotyping
 
*Under Genotype folder, pick regpcr program for PLT genotyping
 
  
Make sure to press enter 2x once to confirm Tubes and second time to start PCR
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Use the following Volumes per 25ul Reaction:
 +
 
 +
Per sample (1X)
 +
#Dream Tag Master mix: 12.5uL ("Molecular Biology Stuff" box in freezer)
 +
#0.4um Primer Mix: 5ul
 +
#Sterile ddH2O: 7.5ul
 +
 
 +
*Template: 1 uL
 +
 
 +
 
 +
Run "specfic" PCR Program for gene of interest (approx 2 hours).
 +
 
 +
*[[Genotyping Program]]
 +
*[[PCR Amplification of DNA]]
  
 
see [[Preparing an Agarose Gel]] for details on preparing a DNA gel
 
see [[Preparing an Agarose Gel]] for details on preparing a DNA gel
 +
 +
[[Category: Genotyping]]
 +
[[Category: Mouse Work]]

Latest revision as of 17:00, 8 June 2020

see Genotyping Program for strain specific details

Materials

  1. Dream Taq Green master mix
  2. Specific gene Primers (0.4um Working stock)
  3. Tail digest DNA
  4. ddH2O

Protocol

First, make 250ul of 0.4um working stock primers from 100um Primary Stocks.

  1. 248 ul ddH20
  2. 1ul forward primer (100um)
  3. 1ul reverse primer (100um)


Use the following Volumes per 25ul Reaction:

Per sample (1X)

  1. Dream Tag Master mix: 12.5uL ("Molecular Biology Stuff" box in freezer)
  2. 0.4um Primer Mix: 5ul
  3. Sterile ddH2O: 7.5ul
  • Template: 1 uL


Run "specfic" PCR Program for gene of interest (approx 2 hours).

see Preparing an Agarose Gel for details on preparing a DNA gel