Difference between revisions of "Sequence Alignment for Phylogenetic Analysis"
From Bridges Lab Protocols
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* CLUSTAL Omega is available at https://www.ebi.ac.uk/Tools/msa/clustalo/ | * CLUSTAL Omega is available at https://www.ebi.ac.uk/Tools/msa/clustalo/ | ||
| − | * Select output format NEXUS to import into Mr Bayes | + | * Select output format NEXUS to import into Mr Bayes or PHYLIP format to import into PhyoBayes |
| − | * Generate phlogenetic trees with Mr. Bayes [[Using Mr Bayes to For Phlyogenetic Analysis]] | + | * Generate phlogenetic trees with [http://megasun.bch.umontreal.ca/People/lartillot/www/download.html PhyloBayes] or Mr. Bayes [[Using Mr Bayes to For Phlyogenetic Analysis]]. |
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| + | === PhyloBayes Analysis == | ||
| + | |||
| + | * Mark in your notes the software version used. | ||
| + | * The PhyloBayes manual can be found [http://megasun.bch.umontreal.ca/People/lartillot/www/phylobayes4.1.pdf here]. | ||
Revision as of 12:58, 18 April 2019
Locate Sequences and Generate FASTA File
Create Multiple Sequence Alignment using CLUSTAL Omega
- CLUSTAL Omega is available at https://www.ebi.ac.uk/Tools/msa/clustalo/
- Select output format NEXUS to import into Mr Bayes or PHYLIP format to import into PhyoBayes
- Generate phlogenetic trees with PhyloBayes or Mr. Bayes Using Mr Bayes to For Phlyogenetic Analysis.
= PhyloBayes Analysis
- Mark in your notes the software version used.
- The PhyloBayes manual can be found here.
