Sequence Alignment for Phylogenetic Analysis
From Bridges Lab Protocols
Locate Sequences and Generate FASTA File
Create Multiple Sequence Alignment using CLUSTAL Omega
- CLUSTAL Omega is available at https://www.ebi.ac.uk/Tools/msa/clustalo/
- Select output format NEXUS to import into Mr Bayes or PHYLIP format to import into PhyoBayes
- Generate phlogenetic trees with PhyloBayes or Mr. Bayes Using Mr Bayes to For Phlyogenetic Analysis.
= PhyloBayes Analysis
- Mark in your notes the software version used.
- The PhyloBayes manual can be found here.
