Using Bioconductor To Analyse Microarray Data

From Bridges Lab Protocols
Revision as of 23:40, 26 July 2009 by Davebrid (talk | contribs)
Jump to navigation Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.


Software Requirements

  • R, get from [CRAN]
  • Bioconductor, get from [Bioconductor]
  • Bioconductor packages. Install as needed:
    • Biobase
    • GEOquery
source("http://www.bioconductor.org/biocLite.R")
biocLite("PACKAGE")

Obtaining GEO Datasets

  • Open a R terminal
  • Load Biobase and GEOquery packages
libary(Biobase)
library(GEOquery)
Retrieved from "http://bridgeslab.sph.umich.edu/protocols/index.php?title=Using_Bioconductor_To_Analyse_Microarray_Data&oldid=232"